SE1930046

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4089
  • Lotus japonicus
  • SE1930046
  • hAT
  • Hat15
  • CM0106:561520-561889
  • AGTATTGT
  • AGTATTGTCAGGGCCGGTCC

Secondary structure and sequence

TSD    TIR
5'



3' 
       TG             CGACAT     A  C CTGATCAAATAATAAAAATAGACCCCTAATAATTTTAACGTTCGAAATTTCATCAGAACCATTATGAACCCGCTAGGGGTCGTGTTTTCGAATCCAAACAACACGACCTTTTGCTTTAAAGGTGGGATTCGAACCCGGTACATAAAAGTAACA
  AGTAT  TCAGGGCCGGTCC      TTTGG GG T                                                                                                                                                         
  |||||  |||||||||||||      ||||| || |                                                                                                                                                          
  TTATG  AGTCCCGGCCGGG      ACCCG GA C                                                                                                                                                         
TG     --             ------     -  - ACGTTCGTCCGGGTGTCGGGTCCCGGAGGTTTTTTTTCCCCGGGTTTTTTTTTAAGAGTAATTTGAAAAGGGATTTTATTTTAAATCAATATTATTAATTACAAGTTCTAAAATAATTACTGAACTCGACCAGACCACCAATCATTAACACAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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