Plant MITE

SE1930047

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4090
Lotus japonicus
SE1930047
hAT
Hat16
LjT09B12:28448-29112
ATCCGAAC
CGAACTAGGGATGGCA

Secondary structure and sequence

TSD TIR

5'

3'

ATC    C           CCCAC    GGCAGGGGCGGGGAGTGCCTTCCCGGTCCCCGTCCCCACATCTTTCTTTTGTCCCCATCCCCATTCCCCGCGGCGGGTTGAATTTTCACCCCGTCTCCATTCCCCATCTCCCCATGGGCCCCCACGGGGATCCTTAACATGCCATTAAAATTTTAAATTAAGTTGTAAAATATACAAGTTTTAGCAATAAATTTAAAGACCACAAGTGATAATGCAACTACATCAAATTCAAGATAAATATATGATAAAGTTTAAATAAAATTCATCACATAATGTGTGAAGTCTACAAAATGAACAATATGTA
   CGAA TAGGGATGGCA     GCGG                                                                                                                                                                                                                                                                                                                
   |||| |||||||||||     ||||                                                                                                                                                                                                                                                                                                                C
   GCTT ATCCCTACTGT     GTAG                                                                                                                                                                                                                                                                                                                
CAA    A           TAAAA    ACTTCTACCCCTAGGGGCACCCCTGACGAGACAAACCCTGGGGCTGGAACTCTTTAAAAAAGGGCAACCCTACCCCTGCCTCTGCTTTTGGGGGGACTATTCTTAAACCCCTGCTCCTACCTCTGGTAAGAGGGGCGGGACGCCTCAGTGGCGGGGTATATATATTCAATTTTATGTTATTGTGTGAATATTTATAACTTAATGAATACTATGTCTGAAGTGAAAAATCTACTCAACTTACGAGCTTTCTTATGAAACCCACAACCCGAAGTTTAAAAAATACTCAACTTACAACATTAAATGC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1930047

ATCCGAACTAGGGATGGCACCCACGCGGGGCAGGGGCGGGGAGTGCCTTCCCGGTCCCCGTCCCCACATCTTTCTTTTGTCCCCATCCCCATTCCCCGCGGCGGGTTGAATTTTCACCCCGTCTCCATTCCCCATCTCCCCATGGGCCCCCACGGGGATCCTTAACATGCCATTAAAATTTTAAATTAAGTTGTAAAATATACAAGTTTTAGCAATAAATTTAAAGACCACAAGTGATAATGCAACTACATCAAATTCAAGATAAATATATGATAAAGTTTAAATAAAATTCATCACATAATGTGTGAAGTCTACAAAATGAACAATATGTACCGTAAATTACAACATTCAACTCATAAAAAATTTGAAGCCCAACACCCAAAGTATTCTTTCGAGCATTCAACTCATCTAAAAAGTGAAGTCTGTATCATAAGTAATTCAATATTTATAAGTGTGTTATTGTATTTTAACTTATATATATGGGGCGGTGACTCCGCAGGGCGGGGAGAATGGTCTCCATCCTCGTCCCCAAATTCTTATCAGGGGGGTTTTCGTCTCCGTCCCCATCCCAACGGGAAAAAATTTCTCAAGGTCGGGGTCCCAAACAGAGCAGTCCCCACGGGGATCCCCATCTTCAGATGAAAATTGTCATCCCTAATTCGAAC

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