SE1930048

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4091
  • Lotus japonicus
  • SE1930048
  • hAT
  • Hat17
  • CM0175:316775-317186
  • TGAGAGTG
  • GTAGGGATG

Secondary structure and sequence

TSD    TIR
5'



3' 
TGAGAGT         ACAA          C GACTCAGGTTTTGCCTATCCCAAACCCGAACCCAATCTCTCATATAAACTTAAACTCAAACCCATCGGGTTGTAGCCCTTAAATTCATGTCATAACCTAACTCAATGTATAGATTTTTTTGCAAAATAAAATGCAACTTGTATTATTTTATTGTGAAAAAATCTTTTATGTATTT
       GTAGGGATG    TGGGTCGGGT G                                                                                                                                                                               
       |||||||||    |||||||||| |                                                                                                                                                                               T
       TATCCCTAC    TTGCCTTGGG C                                                                                                                                                                               
GTGAGAG         --CG          - TTGGACTAAAATGCCCGTTTTAGGCAACCCAAACCCAAACCATAACCACTTTAGGCGTGGGCTTGGGCTTGTAATATATATTTTAACGTTTCGATGAGAATGTATAGTACAATTGTTGGATTAAACAATTGTTAAACTAGTATAAACTTGTAATTCCATAATATAAAAAACCGTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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