SE1930059

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4102
  • Lotus japonicus
  • SE1930059
  • hAT
  • Hat3
  • LjSGA_013512:1903-2507
  • CTTGTTAT
  • CAGTGTTTTAAAACTCGGCTCGATC

Secondary structure and sequence

TSD    TIR
5'



3' 
CTTGTTAT           A          -   ATC  -      CGGGGTACTGAGTCACTGAGTCACTGGTCGGACCAGTGGGTCACTGGTTCAATTGTTTGACTCGGTGTATATTAAAAAATAATAAAAAATGTCTAATGCAATATAAAGTTAATATAAAAAAAATAAAATACGTTTTTAATCAACAACATCCTGGTGGTGCAGTGGTAGTTTTCCTTCATATTACCTCCATGACTTGTGTTCAAACCCTGTTGGCACCATTTTTTAACAAAATGTTTGCAACTGGAAAAAAAAAACAA
        CAGTGTTTTAA ACTCGGCTCG ATC   GA CTCGGT                                                                                                                                                                                                                                                                 
        ||||||||||| |||||||||| |||   || ||||||                                                                                                                                                                                                                                                                 T
        GTCACAAAATT TGAGCCGAGC TAG   TG GCCACT                                                                                                                                                                                                                                                                 
TATTGTTC           C          C   CCC  A      GGACTGGCCAGGCTCGGAGTGTAGTCTGGCCAACACGTTCAGTGAGCCGACATTGGTAAAACTTGGCCGGCCAAATTACCAGTTTAGCCACTGAGCCGGCCAAAAATAACTTGGCCGCTCAGTGAGTAAAGAATAAAAAAAAAACAATCAAACAATTGCCACCCGATCTATCTTCGGGTAAAAGGTCATTAATAAATTGAGAAAGTGTAACAAAAAAAAGTCAGGTCAACCCAATAAATTGGATAACCCGGAAAATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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