SE1930063

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4106
  • Lotus japonicus
  • SE1930063
  • hAT
  • Hat8
  • CM0118:451726-452015
  • CTTGTGCA
  • TGCACAGGGGCGGATCTA

Secondary structure and sequence

TSD    TIR
5'



3' 
CTTG        ----          CCTTA     AGGGGGTTCAATTGAACCCCCTGAACAAAAAAAAATTGCCCTTATTTTCCTATATAATTTTTTTTGAACCCCCTGAAAATTTTAAATTATACTAGTAGACTAAGTTTTGCACCT
    TGCACAGG    GGCGGATCTA     TGTTC                                                                                                                  
    ||||||||    ||||||||||     |||||                                                                                                                   
    ACGTGTTC    CCGCCTAGGT     GGGGC                                                                                                                  
            GTCA          --CCT     CCCAGTCCCCCAAGTTTTAAAAATTTACTTGTGTAGCTATTTTTATATTTATTTTTGTTGAAATTATACAAATATGTAGTCTTTCATATGTTCAGTATCCAAAAAACACGTTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3