Plant MITE

SE1920064

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4107
Lotus japonicus
SE1920064
Mutator
M16
LjSGA_004883:1356-1567
AAATAATAT
TGAGTTTAATGGTTGTGCACTGTCAGTGTAAAACATCTTTACACATACGTCCA

Secondary structure and sequence

TSD TIR

5'

3'

AAATAATA             T                  A   -C        T    C  ATAAC  AA     C   TTC    --  A    TGATCCTTTTTA
        TGAGTTTAATGGT GTGCACTGTCAGTGTAAA CAT  TTTACACA ACGT CA     AG  TGTCA GTA   AAAT  GC TTTA            
        ||||||||||||| |||||||||||||||||| |||  |||||||| |||| ||     ||  ||||| |||   ||||  || ||||             
        ACTTAAATTACCA TACGTGACAGTCACATTT GTA  AAATGTGT TGTA GT     TC  ACGGT TAT   TTTA  CG AAAT            
TATAATAA             T                  -   AA        C    A  GACTA  CA     T   TCT    TT  A    TAAATTAATTTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1920064

AAATAATATGAGTTTAATGGTTGTGCACTGTCAGTGTAAAACATCTTTACACATACGTCCAATAACAGAATGTCACGTATTCAAATGCATTTATGATCCTTTTTATTTTAATTAAATTAAAAGCTTATTTTCTTATTTGGCAACCTATCAGTGAATGTCTGTGTAAAAAATGTTTACACTGACAGTGCATTACCATTAAATTCAAATAATAT

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