SE1920071

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4114
  • Lotus japonicus
  • SE1920071
  • Mutator
  • M18
  • CM0105:1447420-1447848
  • TTCCAAATT
  • GGCTTAAATATGTTTTTGGTTCCTCTA

Secondary structure and sequence

TSD    TIR
5'



3'
TTCCAAATT                  G        AAATTAGGGTCTTTT       A     GT                T        C  -AA  C     A   -------C      C  C    -----C  -  T    --   ---       G C         ------------------                 CAATAC    A              A    AA
         GGCTTAAATATGTTTTTG TTCCTCTA               GGTTTAG CCCCT  AAATATTTTTCTTTGG ATACACCC TA   TG AAAAT ATA        TGAGCC CT CCGT      AC CT ACGT  CAT   TTAGAGG G CTAAACCAA                  AGACTTAAACCAAAGAA      TTTT GAGGGACCTAAGAC CAAT  
         |||||||||||||||||| ||||||||               ||||||| |||||  |||||||||||||||| |||||||| ||   || ||||| |||        |||||| || ||||      || || ||||  |||   ||||||| | |||||||||                  |||||||||||||||||      |||| |||||||||||||| ||||   
         CCGAATTTATACAAAAAC AGGGAGAT               CCAAATC GGGGA  TTTATAAAAAGAAATC TATGTGGG AT   AC TTTTA TAT        ATTCGG GA GGCA      TG GA TGCA  GTA   AATCTCC T GATTTGGTT                  TCTGGATTTGGTTTCTT      AAAA CTCCCTGGATTTTG GTTA  
TTAAACCTT                  A        ---------------       C     GT                T        A  AAA  -     A   ATCTCCCT      A  C    ATTGCC  C  C    CT   TAA       G A         CCTTAGTACTAAAATCTC                 AGCACT    C              A    AA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End