Plant MITE

SE1920077

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4120
Lotus japonicus
SE1920077
Mutator
M19
LjT35C22:97843-98115
CTACTCAAC
GGGAATTAGATTTCCCACCCCATTCATTAGAATTGTCACCCCACTAAAATACTCCAGAAGATTAAGTTCTGTAGTGCTCCGGAAGATAAACTTCCG

Secondary structure and sequence

TSD TIR

5'

3'

CTACTCAAC                                         C             A              GT             A          AA --    TTAAAAATGAGGGTGCCAAATTTA
         GGGAATTAGATTTCCCACCCCATTCATTAGAATTGTCACCC ACTAAAATACTCC GAAGATTAAGTTCT  AGTGCTCCGGAAG TAAACTTCCG  G  TCCT                        
         ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||  ||||||||||||| ||||||||||  |  ||||                        A
         CCCTTAATCTAAAGGGTGGGGTAGGTAATCTTAACGGTGGG TGATTTTATGAGG CTTCTAATTCAAGA  TCACGAGGTCTTC ATTTGAAGGC  C  GCAT                        
CAACTAATC                                         A             C              AC             A          -- TA    AGTCAACCAAATAAATGATGCGTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1920077

CTACTCAACGGGAATTAGATTTCCCACCCCATTCATTAGAATTGTCACCCCACTAAAATACTCCAGAAGATTAAGTTCTGTAGTGCTCCGGAAGATAAACTTCCGAAGTCCTTTAAAAATGAGGGTGCCAAATTTAAGTGCGTAGTAAATAAACCAACTGATACGATCCGGAAGTTTAACTTCTGGAGCACTCAAGAACTTAATCTTCCGGAGTATTTTAGTAGGGTGGCAATTCTAATGGATGGGGTGGGAAATCTAATTCCCCTAATCAAC

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