Plant MITE

SE1920079

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4122
Lotus japonicus
SE1920079
Mutator
M20
CM0696:410337-410951
GAACATCTC
TCGACTTTTTTACATGACTAGTGCAAGTTTTAAATAAATTTACCAAACTAGTGCAACTTTTGATTTAATTACTAAAATAGTGTAAATCGCCACTTGAAGTGGCGATATCTTTTTTTTTTATGAAATCGTCACTAGCAGTGGCGACACCATATTTTTTTTTGACTTTGTTTATTAGTGACGGAAAGTTGTCCGTCACAAAATCC

Secondary structure and sequence

TSD TIR

5'

3'

GAACATC              T A      CA          -AAA                       G                                 G                 --                                   ------            G     G                AGT                 GTCGCTAAA     TGTGACGGAAGTATGTACACTTCAATTTCCGCCGCTAAATTCTTTTTCATTATTCACTAAGATTTTGAGACGAAATATAT
       TCGACTTTTTTACA G CTAGTG  AGTTTTAAAT    TTTACCAAACTAGTGCAACTTTT ATTTAATTACTAAAATAGTGTAAATCGCCACTT AAGTGGCGATATCTTTT  TTTTTTATGAAATCGTCACTAGCAGTGGCGACACC      ATATTTTTTTTT ACTTT TTTATTAGTGACGGAA   TGTCCGTCACAAAATCC         AATTT                                                                                
       |||||||||||||| | ||||||  ||||||||||    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||||||||||||||||||||||||||||||||      |||||||||||| ||||| ||||||||||||||||   |||||||||||||||||         |||||                                                                                T
       AGCTGAAAAAATGT C GATCAC  TCAAAATTTA    AAATGGTTTGATCACGTTGAAAA TAAATTAGTGGTTTTATCACATTTAGCGGTGAA TTCACCGCTATAGAGAG  AAAAAATACTTTAGCAGTGATTGTCACCGCTGTGG      TATAAAAAAAAA TGAAA AAATAATCACTGCCTT   ATAGGCAGTGTTTTAGG         ATTAT                                                                                
CTCTACA              T C      -A          AAAA                       G                                 G                 AA                                   AATAAA            A     G                AGC                 --ATTATAA     ATTTTCCATAATCACTGCCTTACACTTCTTTCTATCGTAGGCAGTTTTGCAAAGATCGCTGCCTTAAGCAAAATGCTGCT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1920079

GAACATCTCGACTTTTTTACATGACTAGTGCAAGTTTTAAATAAATTTACCAAACTAGTGCAACTTTTGATTTAATTACTAAAATAGTGTAAATCGCCACTTGAAGTGGCGATATCTTTTTTTTTTATGAAATCGTCACTAGCAGTGGCGACACCATATTTTTTTTTGACTTTGTTTATTAGTGACGGAAAGTTGTCCGTCACAAAATCCGTCGCTAAAAATTTTGTGACGGAAGTATGTACACTTCAATTTCCGCCGCTAAATTCTTTTTCATTATTCACTAAGATTTTGAGACGAAATATATTTCGTCGTAAAACGAATTCCGTCGCTAGAAACGTTTTGACGGATGCTATCTTTCTTCACATTCCGTCACTAATACCTTTTATATTAAATATTAGGATTTTGTGACGGATACGATTCCGTCACTAATAAAGAAAGTAAAAAAAAAATATAAATAAGGTGTCGCCACTGTTAGTGACGATTTCATAAAAAAAAGAGAGATATCGCCACTTGAAGTGGCGATTTACACTATTTTGGTGATTAAATGAAAAGTTGCACTAGTTTGGTAAAAAAAATTTAAAACTACACTAGCCTTGTAAAAAAGTCGAACATCTC

Copy Cancel