SE1920084

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4127
  • Lotus japonicus
  • SE1920084
  • Mutator
  • M21
  • CM0196:236512-236713
  • CCGAAAAAA
  • GAG

Secondary structure and sequence

TSD    TIR
5'



3' 
CCGAAAAAA   AAAAAGGTTG                          -          C                     -TCAC   AATTAATGAAATT
         GAG          ATGCACCGACGGTGTAAAGTTTTTTT ACACCGTCAA CAATTAGATTTTAAGGATGTG     GTC             
         |||          |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||     |||              
         CTC          TACGTGGCTGTCACATTTCAAAAAAA TGTGGCAGTT GTTAGTCTAAAATTCCTACAC     TAG             
AAAAAAGCC   AAATTAAAGA                          A          A                     TCTTT   AGAGAAAAATAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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