Plant MITE

SE1930085

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4128
Lotus japonicus
SE1930085
hAT
Hat23
CM1285:5877-6576
GTTCTTAT
ATTAGGGGTGGAAATAGGCCAGGC

Secondary structure and sequence

TSD TIR

5'

3'

GTTCTT                    A   -------------  --   GTCAGGGGCCTATGGCTTGACTCGTTAGAGGCTCGGCTCGGCTCGGCTCGTTTATTAAAAAGGCCAGGCTAAGGCTTTTTTAAAAGCTTGATTAACAAAAAAGGTGAGGCCCAAACTATTAAAAAAACCTATTTGGCCTAACAGGCCGGCCTATTTATATATTATTTGATTTTTTTTTAAACTGATGTATACTTTAGTATAAAACAAAACCCTAAGTTCCTACCCTAACCTAGATTAGAAAGGTTCCAGACATATTCAACATTGCACATCATCAACCGCACAGGACGCAGGGTGCAGCCGGCCACCA
      ATTAGGGGTGGAAATAGGCC GGC             GG  CTC                                                                                                                                                                                                                                                                                                                   
      |||||||||||||||||||| |||             ||  |||                                                                                                                                                                                                                                                                                                                   C
      TGATCCCCACCTTTATCCGG CCG             CG  CCG                                                                                                                                                                                                                                                                                                                   
TATTCT                    C   GCTCGACTTGAAA  CA   AATCCGGACTGGACGTAAGAAAAAAGCACCGGGTTCGGACCGGACACCGGATAGTTATCCGGTTTAAAATGCCGAACTGGACCGGAAAAGATTCCGGACTGGACCGGATGTTCGGACGAATTTTCGGATAAATTGTCTGTTAATATAATTTTCTTACAGTAATCCGACCGCCCGATTATTCGGAAAATATATAGTAACGTGAAAGAAAAATTTATTTTTATCTGTGGACGTGAAGAACATTTTGCCACCACCACTCACCACTGAGCGCCAAACCTCCTCTCCACCTGAACCGTCGCCGTCTGGCCGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1930085

GTTCTTATTAGGGGTGGAAATAGGCCAGGCGGCTCGTCAGGGGCCTATGGCTTGACTCGTTAGAGGCTCGGCTCGGCTCGGCTCGTTTATTAAAAAGGCCAGGCTAAGGCTTTTTTAAAAGCTTGATTAACAAAAAAGGTGAGGCCCAAACTATTAAAAAAACCTATTTGGCCTAACAGGCCGGCCTATTTATATATTATTTGATTTTTTTTTAAACTGATGTATACTTTAGTATAAAACAAAACCCTAAGTTCCTACCCTAACCTAGATTAGAAAGGTTCCAGACATATTCAACATTGCACATCATCAACCGCACAGGACGCAGGGTGCAGCCGGCCACCACTGCCGGTCTGCCGCTGCCAAGTCCACCTCTCCTCCAAACCGCGAGTCACCACTCACCACCACCGTTTTACAAGAAGTGCAGGTGTCTATTTTTATTTAAAAAGAAAGTGCAATGATATATAAAAGGCTTATTAGCCCGCCAGCCTAATGACATTCTTTTAATATAATTGTCTGTTAAATAGGCTTTTAAGCAGGCTTGTAGGCCAGGTCAGGCCTTAGAAAAGGCCAGGTCAAGCCGTAAAATTTGGCCTATTGATAGGCCACAGGCCAGGCTTGGGCCACGAAAAAAGAATGCAGGTCAGGCCTAAGCCACGCAAAGTTCAGCTCGGCCCGGCCTATTTCCACCCCTAGTTCTTAT

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