SE1950090

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4133
  • Lotus japonicus
  • SE1950090
  • PIF/harbinger
  • To9
  • CM1303:43849-44270
  • TTA
  • TAGGGGGCGTTTGGTAGAAGGTTGGGAAATACATT

Secondary structure and sequence

TSD    TIR
5'



3' 
T                G                  ---         AATATTTTTAGGAGTCTGATTGTTGAGAATATCATTTCTGGGTAAGACTTAAGGTGTGTTTGGTTAAGATTTAGGATTCATGCTGGGAATATTTTTAAATTTTATTTAATTTAAAAATTTAAAAATTCAAAATGATAAAAAAAATTAAATATGATGGAATTTGTG
 TAGGGGGCGTTTGGTA AAGGTTGGGAAATACATT   CCCGGGAAT                                                                                                                                                                     
 |||||||||||||||| ||||||||||||||||||   |||||||||                                                                                                                                                                      
 ATTCCCCGCAAACCAT TTCCAACTCTTTATGTAA   CCCTTATAC                                                                                                                                                                     
                 G                  TAG         CTCCATCCCTTAGTATAAGGGCACAAACAATACTCCAACTTTTAACCTACGGGCCCGTATTTTGTAAGGGCGTTTACTGTATTGAAGGTATTGAAGGCAGTAAACTAAGAGTATTTTACCCAACCCTTAGAACCTAAGGGTACCCTTTCTTACATTGAAGGGTGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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