SE1950091

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4134
  • Lotus japonicus
  • SE1950091
  • PIF/harbinger
  • To10
  • CM0008:585331-585739
  • TAA
  • AGAGCATCTCCAATGCTAG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                T  TTCTT              AGCACTATTCATGTGGGGGCGTATTGCCACATGAGTTTAAGCAACTCTCAAGTAATTTTGCTCCAACCATGAGTTCTTAGTTCTTAGTTCTTACTACTATTCATTTGGTCCCACCAACCACATTATTTATACTTTTTTTCCATAAAGTAATAAAACAAAACTCATAA
  AGAGCATCTCCAATGC AG     ATTTCTTAGTTCTT                                                                                                                                                                       
  |||||||||||||||| ||     ||||||||||||||                                                                                                                                                                        
  TCTCGTAGAGGTTACG TC     CAAGAATCAAGAAT                                                                                                                                                                       
AA                T  -----              AAAACCTCAATTCTTGATTCTTGATTCTTGAAATGGTAACCTCCACGACTGTACCTGAGGAATCAAGAATTTTTATTCTTGAGTCAAGAATATATTCTACAAAACGAAAAACTCAAGAATCGAATTTTATAATTAATAAAGAGAGAGTAGGTTTAATGAAATAATGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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