SE1920093

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4136
  • Lotus japonicus
  • SE1920093
  • Mutator
  • M22
  • CM0803:284150-284340
  • TTTAGTTTT
  • GTAAGATGATTTATCCTCCTACTTATCCTCCTATAAAATCTCATATACACTAAATG

Secondary structure and sequence

TSD    TIR
5'



3'
TTTAGTTTTTT   AGA  ATT          -C    C          A    A    C        AACTAAT      --------    --      TA
           GTA   TG   TATCCTCCTA  TTAT CTCCTATAAA TCTC TATA ACTAAATG       GAGTTA        TTGC  TTTTGA  
           |||   ||   ||||||||||  |||| |||||||||| |||| |||| ||||||||       ||||||        ||||  ||||||   
           CGT   AC   ATAGGAGGAT  GGTA GAGGATGTTT GGAG ATGT TGATTTAC       CTTAAT        AATG  AAGACT  
 TTTTTGATTT   --A  GAT          AA    T          A    G    A        -CTCTTT      TCACAAAA    TA      CT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End