SE1950094

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4137
  • Lotus japonicus
  • SE1950094
  • PIF/harbinger
  • To10
  • CM0249:555691-556095
  • TTA
  • AGAGCATCTCCAATGC

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                -         ----    CTTATTTTGGAGTTAAGAACTAAGAACTAAGAACTTTACCATTGGAGGTGCTGACATGGACTCCTTAGTTCTTAAAAATAAGAACTCAGTTCTTATATAAGATGTTTTGCTTTTTGAGTTCTTAGCTTAAAATATTAATTATTTCTCTCTCATCCAAATTACTTTATTA
  AGAGCATCTCCAATGC AAGGTTCTT    AGTT                                                                                                                                                                         
  |||||||||||||||| |||||||||    ||||                                                                                                                                                                          
  TCTCGTAGAGGTTACG TCAAGAATA    ATCA                                                                                                                                                                         
AT                A         AAGA    AGAATCGTGATAAGTACACCCGGGCATAACGGTGTACACAAATTCGTTGAGAGTTCATTAAAACGAGGTTGATACTCAAGAATCAAGAATGATGATAAGTAAACCAGGGTGGTTGGTGTAATAAATATTAAAAAAAAAAGGTATTTCATTATTTTGTTTTGAGTATTTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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