SE1920095

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4138
  • Lotus japonicus
  • SE1920095
  • Mutator
  • M4
  • LjT47C13:20724-21137
  • TTTAATTAA
  • TTAATTAAGGCTTAATTGCACTTTTGGTCACCCAACTTTGTCCTTTATGCGAAAACCGTCCCCCAACTAAGAAATTAGCAAAAGCATCCTCAAAGTTACCCTTCGT

Secondary structure and sequence

TSD    TIR
5'



3'
T        -                     A   -             A  C           C              A      -        A              GAAC                                                 AC          A     T T  --TTCCTCACCATCGT    TGCA
 TTAATTAA GGCTTAATTGCACTTTTGGTC CCC AACTTTGTCCTTT TG GAAAACCGTCC CCAACTAAGAAATT GCAAAA GCATCCTC AAGTTACCCTTCGT    ACATTTGGTCCCTTTAGTATTTTTCATCCAAAATCTAACGGTTTGAGGG  CAAAAGTGCA TTAAG C AC                GACC    
 |||||||| ||||||||||||||||||||| ||| ||||||||||||| || ||||||||||| |||||||||||||| |||||| |||||||| ||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| ||||| | ||                ||||    C
 AATTAATT CCGAATTAACGTGAAAACCAG GGG TTGAAATAGGAAA AC TTTTTGGCAGG GGTTGATTCTTTAA CGTTTT CGTAGGAG TTCAATGGGAGGCA    TGTAAACCAGGGAGATCATAAAAGGTAGGTTTTAGATTGCCAAACTCCT  GTTTTCACGT AATTC G TG                CTGG    
         T                     G   A             G  A           A              A      T        C              ATTT                                                 -A          A     C C  CTTTACCTTTTAACCC    TTTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End