SE1920098

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4141
  • Lotus japonicus
  • SE1920098
  • Mutator
  • M24
  • CM0200:2284475-2284890
  • TTTTAATTA
  • TTAATTAAGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TT          CAAA  -        C C   AATTCTTTT            ------  G       ----GAAAT G   AA    AGGGTAGAGAAAGAGAGACAATTAGACATTTTAACTTTTGTTGGAATCTTAGACATCATGCTGGTTGTTGCAGCTCTTTTTAAGTCAGAATCTAGTGGTGGAAGTGAAAATGTATGCGATGTAAGA
  TTAATTAAGG    TT CTGTGGTA C TGA         GGGTACGGTACC      CC ACTAGAT         T TGA  TTGA                                                                                                                              
  ||||||||||    || |||||||| | |||         ||||||||||||      || |||||||         | |||  ||||                                                                                                                              A
  AATTAATTTC    AA GACACCAT G ATT         CCCATGCCATGG      CT ACATTTT         G AGG  TTTT                                                                                                                              
            CACG  C        A A   AAATTAACT            AATTTA  -       GAATAAATA -   --    AACAATTGAAGATTTTCGAAGATCGTGGTAGTAAGTACTCGCAAAATCATCTAATAGGGTAATAGAACAACAAGCGGTCTGTGGTTAAAAGTATAGAGTGGTAATAACACCAACTATTGAGAGAAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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