SE1920100

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4143
  • Lotus japonicus
  • SE1920100
  • Mutator
  • M25
  • CM0104:2264719-2264999
  • ATATCTAAG
  • AGGCTAAAAAGCACTTTTGGCCCCTGATGTTTCAACTTTGTGCAAATTCTGCCCCTACTCTATTTTTGTCGATGTTTCTACCCCTCATGTTTTCAAACAGTGCATTGTCTACCCCTC

Secondary structure and sequence

TSD    TIR
5'



3' 
ATATCTA             C                     C         A           C           C                                               A    TTCAAACAGTGC
       AGGCTAAAAAGCA TTTTGGCCCCTGATGTTTCAA TTTGTGCAA TTCTGCCCCTA TCTATTTTTGT GATGTTTCTACCCCTCATGTTTTCAAACAGTGCATTGTCTACCCCTC TGTT            
       ||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||            A
       TCCGATTTTTCGT AAAACCGGGGACTACAAAGTT AAACACGTT AAGACGGGGAT AGATAAAAACA CTACGAAGATGGGGAGTACAAAAGTTTGTCACGTGGCAGATGGGGAG GCAG            
ATCTATA             A                     C         C           -           A                                               -    TCCCCATCTGCC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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