SE1910102

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4145
  • Lotus japonicus
  • SE1910102
  • Tc1/Mariner
  • St1
  • CM0029:1009942-1010241
  • TA
  • TACTCCCTCCGTTCCTTATTATAAGACCAT

Secondary structure and sequence

TSD    TIR
5'



3' 
                TA       A    -----   -   G     TTTTTGTTTATAAATATAAGTCCATTTACAATATCAATGGAACATTAATTATTTTTTCCCAAAACTATCCTCATATTTAATATGAAAGAGACAATGAGATTTTGA
TACTCCCTCCGTTCCT  TTATAAG CCAT     ATT TTA TGTTT                                                                                                         
||||||||||||||||  ||||||| ||||     ||| ||| |||||                                                                                                         A
ATGAGGGAGGCAAGGA  AATATTC GGTA     GGT AAG AGAAT                                                                                                         
                TA       A    AAATG   T   -     CTAATTCTTTTCATCAATGTTCGTTATTTAAACATTTTCTTAAATAAGTGAAAGGATCTAATGGGAATAAATTAAAGAATATTTAAAGAGAGAGGTTCAATAATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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