SE1920103

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4146
  • Lotus japonicus
  • SE1920103
  • Mutator
  • M12
  • LjT07P16:20250-20502
  • TAAAGATTT
  • AAAGATTTGGCTTAATAGCTCTTTTGGTCCCTCACTTATCATAATTTTGCACTTTTTGTCACTCTAGAAAACAATTACCA

Secondary structure and sequence

TSD    TIR
5'



3' 
T   GA   -                                  A             --     CTC       CA    C  AAATTA    C   -    -TACACACTTG   CGTTTTA     AA
 AAA  TTT GGCTTAATAGCTCTTTTGGTCCCTCACTTATCAT ATTTTGCACTTTT  TGTCA   TAGAAAA  ATTA CA      GTCC TCT CATT           TGC       GTCCC  
 |||  ||| |||||||||||||||||||||||||||||||||| |||||||||||||  |||||   |||||||  |||| ||      |||| ||| ||||           |||       |||||  A
 TTT  AAA CCGAATTATCGAGAAAACCAGGGAGTGAATAGTG TAAAACGTGAAAA  ATAGT   ATTTTTT  TAAT GT      CAGG AGG GTAA           ACG       TAGGG  
    AG   T                                  C             TC     -TT       --    C  AAAAAC    -   T    CGAATTAAAAA   TTTTTAC     AT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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