Plant MITE

SE1920104

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4147
Lotus japonicus
SE1920104
Mutator
M26
CM0122:911748-912025
ATCGGAGAA
TCGGAGAAGGGAGTTGGGTTTGGCACCCCACCTATGGGGCTTGGCACCCCACT

Secondary structure and sequence

TSD TIR

5'

3'

A  GGA  A               CA        ATG      G          -TTATCAAA         --- A       GTATTCTCCATATTGAATACGGAACTTAAAATTCCGTACTGTATTTAAGCATGCGTG
 TC   GA GGGAGTTGGGTTTGG  CCCCACCT   GGGCTT GCACCCCACT         TACGGAATT   T AAGTTCC                                                         
 ||   || |||||||||||||||  ||||||||   |||||| ||||||||||         |||||||||   | |||||||                                                         T
 AG   CT CCCTCAACCCAAACC  GGGGTGGG   TCCGAA CGTGGGGTGA         TGCCTTAAA   A AAGGCAT                                                         
A  AGG  A               TC        GAA      A          TTTTATCTA         TTT -       AGTTATGCCTTTTATTTTAAGGCGACAAAATCATATATTACTCACCAACTTTTACAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1920104

ATCGGAGAAGGGAGTTGGGTTTGGCACCCCACCTATGGGGCTTGGCACCCCACTTTATCAAATACGGAATTTAAAGTTCCGTATTCTCCATATTGAATACGGAACTTAAAATTCCGTACTGTATTTAAGCATGCGTGTCACATTTTCAACCACTCATTATATACTAAAACAGCGGAATTTTATTTTCCGTATTGATACGGAAATTTAAATTCCGTATCTATTTTAGTGGGGTGCAAAGCCTAAGGGGTGGGGCTCCAAACCCAACTCCCATCGGAGAA

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