Plant MITE

SE1920106

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4149
Lotus japonicus
SE1920106
Mutator
M15
CM0241:454976-455167
TAGAATTAA
AATTAAGGGGTTGTCTAAATGACCCATG

Secondary structure and sequence

TSD TIR

5'

3'

TAG    -A                  C    AGAAAGTT      AAATAACTCATCACCCAATTACATTGAAGATAAATGAGTTGAAATTTCTATA
   AATT  AGGGGTTGTCTAAATGAC CATG        TGGGTT                                                    
   ||||  |||||||||||||||||| ||||        ||||||                                                    T
   TTAA  TCCCCAACAGATTTACTG GTAC        ATGATT                                                    
 AA    GA                  A    ---ACACA      AAATTGTTAGTTATCTGGTTATACTAAAAAATATTGATTTAATTATTTATTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1920106

TAGAATTAAGGGGTTGTCTAAATGACCCATGAGAAAGTTTGGGTTAAATAACTCATCACCCAATTACATTGAAGATAAATGAGTTGAAATTTCTATATTTTATTTATTAATTTAGTTATAAAAAATCATATTGGTCTATTGATTGTTAAATTAGTAACACACATGAGTCATTTAGACAACCCCTAGAATTAA

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