SE1920107

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4150
  • Lotus japonicus
  • SE1920107
  • Mutator
  • M27
  • LjSGA_031693:326-735
  • TCTTTATAG
  • AGCCTTAATAGCACTTTTGGTCTCTCACTTATCACGATTTGACAGTTCTGGTTCCTCATGGAATTTATTAACCTACAACGTCCCTTACGTTTACTAATTGTTGCAGTTTTGGTTTTCCGTCAACTTCCATCCAATTTTTGACAATTTTAGATTAAAAAATCAATTAAAAAAACTAGAA

Secondary structure and sequence

TSD    TIR
5'



3'
TCTTTAT  C       G  C    G                        A           T  T           AC         CC                        T        CC        C    C   T      AA    A                    ---AAA  A   -ACCATAAAAT    AACT
       AG CTTAATA CA TTTT GTCTCTCACTTATCACGATTTGAC GTTCTGGTTCC CA GGAATTTATTA  CTACAACGT  CTTACGTTTACTAATTGTTGCAGT TTGGTTTT  GTCAACTT CATC AAT TTTGAC  TTTT GATTAAAAAATCAATTAAAA      CT GAA           TGTT    
       || ||||||| || |||| |||||||||||||||||||||||| ||||||||||| || |||||||||||  |||||||||  |||||||||||||||||||||||| ||||||||  |||||||| |||| ||| ||||||  |||| ||||||||||||||||||||      || |||           ||||     
       TC GAATTAT GT AAAA CAGAGAGTGAATAGTGTTAAACTG CAAGACCAGGG GT CCTTAAATAAT  GATGTTGTA  GAGTGCAAATGATTGACAACGTCA AATCAAAA  TAGTTGAA GTAG TTA AAATTG  AAAA TTAATTTTTTAGTTAATTTT      GA CTT           ACAA    
TATTTCT  C       A  A    A                        A           T  T           CA         CA                        C        AA        A    A   T      CC    A                    AATTCC  A   CTTATCAAAAT    AAGA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End