SE1910109

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4152
  • Lotus japonicus
  • SE1910109
  • Tc1/Mariner
  • St10
  • CM0269:499882-500679
  • TA
  • TACTCCCTCCGTTCCTTTTTATTTGTCTTTCTAGCACAA

Secondary structure and sequence

TSD    TIR
5'



3' 
                                       --------------------------     TTCCACCAAGGTATTGCACTTTTAGAGCTAATTTTCCCATTTTACCCTAATTCAATTCACTATTTACTTTATCTTCATTCATAGAATTTCTCTCTCCAATAATTAATTTCCTAATTTTCCCACAACACTCTCTCTCATATCATTAAACTATTTCAGTTTTCAACAACATTAATCTTACATTGTCTCATGCACTTCTCAAAAAAAGACTAAAAGACTTCAAAAAAAAAGGAAACACAGAAGGTTTATACAATTATACTCCAGCACTCCAATTCCCTCCAAGAAAGGACGTGTACATTTCACTCCAATTCCTTCGAATTCCAATTTAATCAAAACTTAATTATT
TACTCCCTCCGTTCCTTTTTATTTGTCTTTCTAGCACAA                          AGCTC                                                                                                                                                                                                                                                                                                                                                      
|||||||||||||||||||||||||||||||||||||||                          |||||                                                                                                                                                                                                                                                                                                                                                       
ATGAGGGAGGCAAGGAAAAATAAACAGAAAGATCGTGTT                          AACCA                                                                                                                                                                                                                                                                                                                                                      
                                       AAAAAAAACAAAAAAAATAAACAGTA     CTAAATTCCAATGTAACATGGTTAATATGGGGATTGTGTTAGAGTAAATAAGGTAAGTTTCAAATCATCACCTTTAAACTTAAATTACTCGAAGGACTTTTGACACAACAGAAAGAACGAAGTTTTAAAGTAACAGGTTAGACTAAAATCGAAATTAATAAGATATACTGATAAGTTGAACTGATATTTATGTATGAGGTTACAATGAAACGCCAATTAATACCTCATGTAAAGTATATTAGTGTAGTATTTTAACGTACTATGAATCACCAAGTTTTTTTTGACGTCATCTTAAACTAACTTACCTTTGACCGGAAACTTAAATTTTTTATTTACTTAAGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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