SE1950111

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4154
  • Lotus japonicus
  • SE1950111
  • PIF/harbinger
  • To12
  • CM0104:507972-508309
  • TTA
  • AGAGCATCTCCA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT         ----   -A      TATGTAATGTCAAATACATACTCTCACCAATATCTATTACCATTGGAGCAAATTTTTAATTCCAACATGGCTAGTGAGAGTATGTGAATGTAGATACTCAATTTAGTCATGAAAAGTGTGTTTGCATTTATTATTGCTTAATGTA
  AGAGCATCT    CCA  TGGGAG                                                                                                                                                 
  |||||||||    |||  ||||||                                                                                                                                                 A
  TCTCGTAGA    GGT  TATGAG                                                                                                                                                 
AT         AATT   AC      TGATTTCATAAATGTAAGATGAAAAATGTTGAAAATTATTACGGTGTAGTAGATGTAGAAAATTAATTAAAAATGAGGTTGGGTTGTTGAGAATTTTCAAATATATTTTTTAATAAAATAATTAACGTTCAAAATAAATTTGGAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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