SE1930113

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4156
  • Lotus japonicus
  • SE1930113
  • hAT
  • Hat29
  • CM0102:159927-160502
  • ATGATGAG
  • TGATGAGCAGTGGCGGA

Secondary structure and sequence

TSD    TIR
5'



3'
A G  G G          AC      GGATTTTTTGAGGGAGCCATGTTAAATTTAATAATATATTATATATTTAAAATTTAAAACACATTGTTACCAGAAGCTAAAAAGCAACAATGAAATAATATTCTGATGCAATATGGGGTATTTTTCTTTTTATCTATTAACCTTCCCTCAATTTTACTTATTCGAGAAAAAGTATTGTTACTGTGGGAGTGAGAGTGTGAGACCCTTCAAATCAAAGGAAGCTTTCATTCTTCTTCAATCTAAGCGGTGGAAGACATATCTTG
 T AT A CAGTGGCGGA  TTGAAA                                                                                                                                                                                                                                                                       
 | || | ||||||||||  ||||||                                                                                                                                                                                                                                                                        
 A TA T GTCACCGCCT  GGAAGT                                                                                                                                                                                                                                                                       
G G  G A          --      AACACTGTCCCTCCTCGATGTCGAGGGGGTTTGAGAGACATTTTTTTTAGACCTATATATGTACATTCCAAGACCTTAGAGTCTAGACACTTCTTAATTTTCTTTATTTACTTACCTTCGGTACTAAATGACGTTCTCCACCTATATTTTTTCTCTTTTCTTATGTTGTATTTGTCAACAACTACTCTTCGTACTACAGGTCGAACTAACGACACAAACAATTCTACCTTTTCCTTATCTTCCTAATTCCTTGATTCTCTTTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End