Plant MITE

SE1910123

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4166
Lotus japonicus
SE1910123
Tc1/Mariner
St12
CM0416:420219-420498
TA
TACTCCCTCCGTTCCTATATAACTGACACT

Secondary structure and sequence

TSD TIR

5'

3'

                 T            TTA     -  --TGCACA    TT  --------    ---  GCAATTAATAATATTTTTTTATTAAAATTACAATCTAACTTCCTACTATACCCTTTATCTCTCTTATTAATTCT
TACTCCCTCCGTTCCTA ATAACTGACACT   AGGTT GT        AGTA  AA        GAAA   TA                                                                          
||||||||||||||||| ||||||||||||   ||||| ||        ||||  ||        ||||   ||                                                                          A
ATGAGGGAGGCAAGGAT TATTGACTGTGA   AAGAT GA        AAGG  AT        GGTG   TG                                                                          
                 T            -TA     A  TTTAAAAC    --  TAATAGAC    AAA  TTTCAAGTTCTCTCGTAATTAATATAAAATGGTTAACATGGGAAGTAAATAACCACCATCCTTTTAACTTTTCA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1910123

TACTCCCTCCGTTCCTATATAACTGACACTTTAAGGTTGTTGCACAAGTATTAAGAAATAGCAATTAATAATATTTTTTTATTAAAATTACAATCTAACTTCCTACTATACCCTTTATCTCTCTTATTAATTCTAACTTTTCAATTTTCCTACCACCAATAAATGAAGGGTACAATTGGTAAAATATAATTAATGCTCTCTTGAACTTTGTAAAGTGGCAGATAATTAGGAACAAAATTTAGATAGAAATAGTGTCAGTTATTTAGGAACGGAGGGAGTA

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