Plant MITE

SE1910124

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4167
Lotus japonicus
SE1910124
Tc1/Mariner
St13
CM1598:48807-49115
TA
TACTCCCTCCGTTCCTATTTATAAGAACCAAATAG

Secondary structure and sequence

TSD TIR

5'

3'

                ATT        C       --AAAGT        ----------- C -  TTTATAAGAACCAACTTGGTGTTTGTGGAGAATTAATTATTTTTAGACAAGAATGCCCTTATTTAATTGAATTTCTCTCTCTTTCCACTTGCTAT
TACTCCCTCCGTTCCT   TATAAGAA CAAATAG       GCACTTGG           T C TT                                                                                               
||||||||||||||||   |||||||| |||||||       ||||||||           | | ||                                                                                                
ATGAGGGAGGCAAGGA   ATATTCTT GTTTGTT       TGTGGGAA           C G TT                                                                                               
                ATC        A       GGTGAAG        ATTCTTTAAAT - A  AGATCTATTAACGTAATTTAAACAAGAGTTAAATATAGTTGAAAAGTTTCAATGGGAGGTGGGTAATAAGAATTAAAGATACGTAGTAATTACGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1910124

TACTCCCTCCGTTCCTATTTATAAGAACCAAATAGAAAGTGCACTTGGTCCTTTTTATAAGAACCAACTTGGTGTTTGTGGAGAATTAATTATTTTTAGACAAGAATGCCCTTATTTAATTGAATTTCTCTCTCTTTCCACTTGCTATAGCATTAATGATGCATAGAAATTAAGAATAATGGGTGGAGGGTAACTTTGAAAAGTTGATATAAATTGAGAACAAATTTAATGCAATTATCTAGATTAGCTAAATTTCTTAAAGGGTGTGAAGTGGTTGTTTGATTCTTATACTAAGGAACGGAGGGAGTA

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