SE1930125

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4168
  • Lotus japonicus
  • SE1930125
  • hAT
  • Hat31
  • CM0104:1501756-1502145
  • GTAATGAT
  • ATTAGGACTGTTCATGGTTC

Secondary structure and sequence

TSD    TIR
5'



3' 
GTAATG                    TCTGA     GAAGCTAACCAAGAACCGAACCGAAAACCGAACCGTTTAAGAACCGAACCTTTAAGAACCGAACCGAACTCGAACCTAAATTGAAAAATCGGTTCGGTAACCGAACCAAAATATCAACTACCAATTCAGGTTCGGTTCGGTTCGAACCATAGTATATCGGT
      ATTAGGACTGTTCATGGTTC     GAACC                                                                                                                                                                 
      ||||||||||||||||||||     |||||                                                                                                                                                                 T
      TGATCCTGACAAGTACCAAG     CCAAG                                                                                                                                                                 
TAGTAA                    -----     AAACGAACTTGGCTTGGCTTGGCTTGGACTTGGTTTTAAAACCAAGCTCTCTTGGCTTGGCTTGGCTATATCATACCAAGCTTGGCTTGGCTTGGCCAATGTTTAAAACCAATTGGTCAAGCCATTTTATACGTATAAATATCTACCAAGCTTGGCTTGGC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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