Plant MITE

SE1920127

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4170
Lotus japonicus
SE1920127
Mutator
M30
CM0221:12861-13104
TAAATTAAA
AGGGAGTTGTTATTCGGACACCCCTACATCTATTTGAACCCCC

Secondary structure and sequence

TSD TIR

5'

3'

TAAATTAA   GA              A     -           A  -    TTTAAAATGCAAAAATAC     - ---      -- TTCAAAGTGTGAGCATAACGCACTTTAGAGGTGCGTCCATAATGCA
        AGG  GTTGTTATTCGGAC CCCCT ACATCTATTTG AC CCCC                  TTATC T   ATGCAC  T                                              
        |||  |||||||||||||| ||||| ||||||||||| || ||||                  ||||| |   ||||||  |                                               
        TCC  TAACAATAAGCCTG GGGGG TGTAGATAAGT TG GGGG                  CGTGT G   AAAGTT  A                                              
 AATTAAA   AT              -     C           C  A    ------------------     A ATA      AA AGCAAGCGTGAAACTTTCACACACGCAATGGATGCGTGAAAGTTTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1920127

TAAATTAAAGGGAGTTGTTATTCGGACACCCCTACATCTATTTGAACCCCCTTTAAAATGCAAAAATACTTATCTATGCACTTTCAAAGTGTGAGCATAACGCACTTTAGAGGTGCGTCCATAATGCACTTTGAAAGTGCGTAGGTAACGCACACACTTTCAAAGTGCGAACGAAAATTGAAAATAGATGTGCGGGGAGTCTGAATAGATGTCGGGGGGTCCGAATAACAATTACCTAAATTAA

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