SE1950130

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4173
  • Lotus japonicus
  • SE1950130
  • PIF/harbinger
  • To15
  • LjSGA_035928:441-838
  • TTA
  • AGAGCATCTCCAATGGAGTCCTTATTTTGGGACCTTAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                -  -TC             ----     ----        CCGGATCTTATTAGATCCCACCATTGGAGCTATCCTACATGGCATGAGATCTTAGCAAAAGCTAAGATCCGTGCCTTAGCTCAGGTACTCTCAAATGTGGGATCTTAAATAAAATAATATTTTTTTCTCTCTCCTTCAATACCATA
  AGAGCATCTCCAATGG AG   CTTATTTTGGGAC    CTTAA    AATAAGAT                                                                                                                                                  
  |||||||||||||||| ||   |||||||||||||    |||||    ||||||||                                                                                                                                                   
  TCTCGTAGAGGTTACC TC   GAATAAAACCCTG    GAGTT    ACACCCGG                                                                                                                                                  
AT                A  CTT             AATT     AAGA        GTTTAACGGTGTATCCTAAATTCTGTGAGTATTCCAGGAGTATGTGTAAAGTGAGATCACCAACTCTAGAATAAAATGAAAACAGACCTGGGTGTCATGAGTTATATAAATATAATAAATAAAAGGAGGGATTAAAAGTGAAACTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3