SE1930133

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4176
  • Lotus japonicus
  • SE1930133
  • hAT
  • Hat33
  • CM0052:203922-204570
  • GTTTAGAG
  • TTTAGAGCATGGTAGT

Secondary structure and sequence

TSD    TIR
5'



3'
G      G         AAGT   ---        ------  TC ---  -  --       - A    -      T  TTTAGGTAAATGATACGTATCGTACCTGTGTATCGAATTGTCCTTGTATCGCGTCCGTATCGGCTGTATCATATCATGTATCGTTGTATCGCGATACGAAGTTGTATCGCACGATACATAAACTGAGCAACCGAGTCAGGTTCGCGATCCGGTTCGGATTTTTTAATTTTTTTTTAGCGTTTTCATACGTTTTTTTTTATTTGGGCCAAAGTGGGTCGACCCAATGCATTTAGGGATTGAAATTACCCTAAATCC
 TTTAGA CATGGTAGT    ATC   GGCCGATA      CA  G   AT AC  GATACGC G TACG ATACGT TT                                                                                                                                                                                                                                                               
 |||||| |||||||||    |||   ||||||||      ||  |   || ||  ||||||| | |||| |||||| ||                                                                                                                                                                                                                                                                
 AGATTT GTACCATCA    TAG   ATAGCATA      AG  T   CT GA  AAAAGCA A CATA AGCATA GC                                                                                                                                                                                                                                                               
G      G         -ACT   CAC        ACTCAT  -- TTT  A  TA       G G    T      -  ATAATACATAGCATGCTATGTTTGTGTGTGTTTTTATTCAGTATTTACTTTTTATATGCTATATATATTATATTAATTAGTTTTATACTGTTTACGTTCAAAAGTAGAGGAAGTTTTAGTAGTTATTGTACTGTTTACGTTTCGTGAAGGTATGAACGATTTGATACGAAATTTGGTATAACGTCATGTCCACTTGCTACAACTTCAACTTGAACATTCGCAACTTCAACTTGGGATCAGTTTTCAACTTTAGCC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End