SE1930138

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4181
  • Lotus japonicus
  • SE1930138
  • hAT
  • Hat23
  • CM0299:279203-279774
  • ATTGCTGC
  • GCTGCTAGGGGTGGAAATAGGTC

Secondary structure and sequence

TSD    TIR
5'



3' 
ATT  T  ---                  A  TGATCCGTCAGGGGCCTATGGCTCGGCTCGTCTGAGCCTCGGTCCGGCCTAGCTCGTTTATTAAAAAGGTCGGGTTTAGGCCTTTTAAAAGGCTTGTTTAACTAAAAAGGTCAAGCTCAAACAATTAAAAAAGCCTTTTTGGCCTGATAGACCGGCCTACTTATCTATTATTTTTATTAATTATATATAATTTAATTTTTGTTGTGTTTGTTTTAAAAAAATTGAGGTCTTCTTCTTTAAAATGCAATGATATACAA
   GC GC   TAGGGGTGGAAATAGGTC GG                                                                                                                                                                                                                                                                 
   || ||   |||||||||||||||||| ||                                                                                                                                                                                                                                                                  
   CG CG   ATCCCCACCTTTATCCGG CC                                                                                                                                                                                                                                                                 
     T  TTA                  C  GGCTCGGTCCGAAACGCACCGGGTTCGGACCGGACGTAAGAGTAAAACACCGGATTCGGACCGACACTGGATAGTTATCCGGTTTAAAATTCCGAACCATACTGGAAAATATTCCGGGCCCGACCGAATATTCGGATGAATTTTCGGATAAATTATCTTTTAAAGTGGTTTTCTTCCAGTAATCCGGTTGCCTGATTATCCGATCGCCCGATTATACGGAAAAATATATAGTGAAGTAAATGAAGTTTATATATTTG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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