SE1920140

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4183
  • Lotus japonicus
  • SE1920140
  • Mutator
  • M5
  • CM2163:60852-61053
  • TTTAAGAAT
  • GAGATTAATTTCTATGCACCGACGGTGTAAATAAGTTTTACATCATCATTCAATCACATCCCTCCATTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
 TTTAAGAAT                               T                          T  C        GTTAGCTCACA    ATTTTGAATTTA
          GAGATTAATTTCTATGCACCGACGGTGTAAA AAGTTTTACATCATCATTCAATCACA CC TCCATTTT           ATTA            
          ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||           ||||            A
          CTCTAATTAAAGATACGTGGCTGTCACATTT TTCAAAATGTGGTAGTAAGTTAGTGT GG AGGTAAAA           AGAT            
ATAAGAATTT                               -                          T  A        -----------    AAAATCTATAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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