Plant MITE

SE1910142

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4185
Lotus japonicus
SE1910142
Tc1/Mariner
St1
CM0278:541173-541472
TA
TACTCCCTCCGTTCCTATATATAAGTCACA

Secondary structure and sequence

TSD TIR

5'

3'

                ATA           ---------AA      A  --C    - GATTAAGAAAAGTAGTTACTAGTAATAAATTTGTAAAAAAAATGATTTACTTTCCTAGATTACCCTTATTTACTTTCCTATGATTTTCTCTCTCCAA
TACTCCCTCCGTTCCT   TATAAGTCACA           TAACTA TT   TCTT A                                                                                                 
||||||||||||||||   |||||||||||           |||||| ||   |||| |                                                                                                 G
ATGAGGGAGGCAAGGG   ATATTCAGTGT           TTTAAA CA   TTTT T                                                                                                 
                ATA           AAAAAACTTTT      -  ATG    A ATTCAGTGAAAGATTATAGATTCTTCGTAATTTATTAAAAAAGGTTCAAGTGGGAGTATAAATTATACTTTCTCTACTATTTAAAATTTTCATAATT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1910142

TACTCCCTCCGTTCCTATATATAAGTCACAAATAACTAATTCTCTTAGATTAAGAAAAGTAGTTACTAGTAATAAATTTGTAAAAAAAATGATTTACTTTCCTAGATTACCCTTATTTACTTTCCTATGATTTTCTCTCTCCAAGTTAATACTTTTAAAATTTATCATCTCTTTCATATTAAATATGAGGGTGAACTTGGAAAAAATTATTTAATGCTTCTTAGATATTAGAAAGTGACTTATATTTTGTAACAAATTTTTTTCAAAAAATGTGACTTATAATAGGGAACGGAGGGAGTA

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