SE1930143

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4186
  • Lotus japonicus
  • SE1930143
  • hAT
  • Hat15
  • CM0851:285319-285770
  • AATAGTTC
  • CAGGGCCGGCCC

Secondary structure and sequence

TSD    TIR
5'



3' 
AATAGTTC         -   ------------    -   --------  GCAAGCAGGCCCACAGCCCAGGGCCTCCAAAAAGAAGGGGCCCCAAAAAAAAATCCATTAAACTTTCCCCTGAAATAAAATCTAGTTATAATAATTAATGTTCAAGATGTTAATAATGACTTGAGTTGGTCTAGTGGCTAGTAACTATCTATGTTACTTTTATGTACCGGGTTCGAATCCCACCTT
        CAGGGCCGG CCC            TGGG CCT        GT                                                                                                                                                                                          
        ||||||||| |||            |||| |||        ||                                                                                                                                                                                           
        GTCCCGGCC GGG            CGGG CCC        TT                                                                                                                                                                                          
CTTGATAA         A   CTGTAAAACCTC    A   TTTTATTA  TTTACCTGGGGATTATGAAAATTACAAGCTTCAAAGTAGTCTTGGTAATACAACCAAGCAAACCGTTGACCGGAGAACGTTGGGCGGGTCCCCAGCGCACAAGCTTAAGTTCGTTGCACTGGAAAACGAAATTAAAAACTTAAGAAAGTTAAGTTTAATTAATTGTTTATTGTACAGTTTTCGGTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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