SE1920148

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4191
  • Lotus japonicus
  • SE1920148
  • Mutator
  • M3
  • CM0123:161333-161544
  • TAATTAATA
  • ATTAATAGAGA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA      -     AAATA   G        A         CTT         AT  AC       AT  CC       C  CAATTT     ---T    T    AAAAT
  ATTAAT AGAGA     GGA ATGCACTG CAGTGTAAA   GTTTTACAC  GC  CCAATTA  TT  GCCACAT AG      ACTAA    TTAC AATT     
  |||||| |||||     ||| |||||||| |||||||||   |||||||||  ||  |||||||  ||  ||||||| ||      |||||    |||| ||||     A
  TAATTA TCTCT     CCT TACGTGAC GTCACATTT   CAAAATGTG  TG  GGTTAGT  AA  CGGTGTA TC      TGATT    AATG TTAG     
 A      A     AATTA   A        A         CTT         AC  CA       GT  TA       T  ------     CATC    T    AAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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