SE1920150

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4193
  • Lotus japonicus
  • SE1920150
  • Mutator
  • M25
  • LjT13N05:38608-39163
  • AAATTAAAG
  • AGGCTAAAAAGCACTTTTGGCCCCTGATGTTTCAAGTTTATGCAAATTCTGCCCCTACTCTATTTTTGTCGATAATTCTACCCTCAATGTTTCACAAATGTGCACTATCTGCCCCTCCATCTGTTTGACGTTAAAAAATTAACGGAAGGGGCTTAGTTGGCACTAGCAATGCCACATCAGCATCCACGTGACGTGA

Secondary structure and sequence

TSD    TIR
5'



3'
AAATTAA                                C      A        C                        AA                   C           A       C   A  TG                        G      A                    A    C   C     A     CACATCACTAAT   AATCAGAACTTGAAAAAAGAGGTGAGGGGGATTCAAACTCAAGTTGGAAAAACAAACCCTTTA
       AGGCTAAAAAGCACTTTTGGCCCCTGATGTTT AAGTTT TGCAAATT TGCCCCTACTCTATTTTTGTCGAT  TTCTACCCTCAATGTTTCA AAATGTGCACT TCTGCCC TCC TC  TTTGACGTTAAAAAATTAACGGAA GGGCTT GTTGGCACTAGCAATGCCAC TCAG ATC ACGTG CGTGA            TAT                                                               
       |||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||  ||||||||||||||||||| ||||||||||| ||||||| ||| ||  |||||||||||||||||||||||| |||||| |||||||||||||||||||| |||| ||| ||||| |||||            |||                                                               C
       TCCGATTTTTTGTGAAAACCGGGGACTACAAA TTCAAA ACGTTTAA ATGGGGATGAGATAAAAACAGCTG  AAGATGGGAGTTACAAAGT TTTACACGTGA AGACGGG AGG AG  AAACTGCAATTTTTTAATTGCTTT CTCGAA TAACCGTGATCGTTACGGTG AGTC TAG TGCAC GTACT            TTG                                                               
AATTAAA                                A      C        A                        CG                   T           C       -   C  TG                        A      A                    G    C   A     C     ------TCCTTC   TTTTCAATATTATATTTATTTTGACACAACGTTTTATATTGTTAATACATACATCAAGTTGAC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End