Plant MITE

SE1910156

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4199
Lotus japonicus
SE1910156
Tc1/Mariner
St12
LjT34E09:90060-90341
TA
TACTCCCTCCGTTTCTATATAACTGATACT

Secondary structure and sequence

TSD TIR

5'

3'

                 T            -TTAA    G ---------    CA    ---    GAAGTAGCAATTAATATTCTTGTTTTACTAAAATTACTATCTAACTTCCTATTATACCCTTTATCTCTCTTATCAATTCTA
TACTCCCTCCGTTTCTA ATAACTGATACT     GGTT T         GGCA  AATA   TTAA                                                                                 
||||||||||||||||| ||||||||||||     |||| |         ||||  ||||   ||||                                                                                 A
ATGAGGGAGGCAAGGAT TATTGACTATGA     CCAA A         AAGG  ATAA   GACT                                                                                 
                 T            TTAAA    G AAAAAAAAC    --    ATT    ATGAAAATGTTAAAGTTCTCTCGTAATTACGATGAAATAGTTAACACGGGAAGTAAATAACAACCATCCTTTTAACTTTTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1910156

TACTCCCTCCGTTTCTATATAACTGATACTTTAAGGTTGTGGCACAAATATTAAGAAGTAGCAATTAATATTCTTGTTTTACTAAAATTACTATCTAACTTCCTATTATACCCTTTATCTCTCTTATCAATTCTAACTTTTCAATTTTCCTACCAACAATAAATGAAGGGCACAATTGATAAAGTAGCATTAATGCTCTCTTGAAATTGTAAAAGTATCAGTTAAATAGGAACAAAAAAAAAGAACCAAATTAGTATCAGTTATTTAGGAACGGAGGGAGTA

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