Plant MITE

SE1910158

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4201
Lotus japonicus
SE1910158
Tc1/Mariner
St7
LjSGA_105039:636-904
TA
TACTCCCTCCGTTCCTTATTAACTGTCCA

Secondary structure and sequence

TSD TIR

5'

3'

         C      TA   A       TTTT     AAAAA   ----- G     -    ATCTGTCCACTTAGAATTTCAAGAGAGCATTAATTGATGTTTTTCCAAGAAATGCCCTTACAAAAACAATAAATGAAGA
TACTCCCTC GTTCCT  TTA CTGTCCA    GAAGA     TTG     T TTCCT ATAT                                                                               
||||||||| ||||||  ||| |||||||    |||||     |||     | ||||| ||||                                                                                
ATGAGGGAG CAAGGA  AAT GACAGGT    CTTCT     CTT     T GTGTT AATT                                                                               
         A      TA   A       ---C     -----   CCAAG -     T    CCTTTCATTAATTAACACAACTAAAAGTATTTTCATAATAAACAAAAGGATATATTGGGAAATCTTACATAAAATAGAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1910158

TACTCCCTCCGTTCCTTATTAACTGTCCATTTTGAAGAAAAAATTGTGTTCCTATATATCTGTCCACTTAGAATTTCAAGAGAGCATTAATTGATGTTTTTCCAAGAAATGCCCTTACAAAAACAATAAATGAAGAAAGATAAAATACATTCTAAAGGGTTATATAGGAAAACAAATAATACTTTTATGAAAATCAACACAATTAATTACTTTCCTTAATTTGTGTGAACCTTCTCTTCCTGGACAGATAAATAGGAACAGAGGGAGTA

Copy Cancel