SE1920159

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4202
  • Lotus japonicus
  • SE1920159
  • Mutator
  • M6
  • LjSGA_037227:940-1147
  • TTGATTTTA
  • GATTTTAGGGTTAATGATCAAATTAGTTCCTGAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
 TT    TT          A            C     GTGGAATA   C         --     C                   CTA    TATTT   -  AT
   GATT  AGGGTTAATG TCAAATTAGTTC TGAAT        GAG TTGATTTTA  TTCTC GACAAAAAATGACGTTTAG   CGGT     ATA CA  
   ||||  |||||||||| |||||||||||| |||||        ||| |||||||||  ||||| |||||||||||||||||||   ||||     ||| ||  T
   TTAG  TCCCAATTAC AGTTTAATCAGG ACTTA        CTC AATTAAAAT  GGGAG TTGTTTTTTACTGCAAATC   GCCA     TGT GT  
ATT    -T          C            T     AATATTCG   A         CA     A                   ACC    TTTTT   A  CG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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