Plant MITE

SE1930166

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4209
Lotus japonicus
SE1930166
hAT
Hat36
CM0194:84015-84695
CATGTATA
TGTATACAGTGGCGGAGCTTGAC

Secondary structure and sequence

TSD TIR

5'

3'

CA      --             ------    ---------C     A     --  GGAGCCATGCTTATAAACCATAAGTACTAAAACCAGTTAGCAAGACATACACCGAACTCATTACACCACAAAGTTTTCTTGTTTCTTGATAGTTACAGTTAAAAAAACCCAAAAGAACTCTAAATGTTCAAACTACCCTTTGGATTACAACATCAAGAAATGAAAAAAAATATATAACTTCTTTTGATATCATCCTTTGTTGAGAGATTAGAACAAATATAGCAATACATAATATCAAAATAGAAAGTTCATATTAAATTAAAGAACACCCACAACCAGATGTATCGCTAAAA
  TGTATA  CAGTGGCGGAGCT      TGAC          GAAAA TGTGG  GG                                                                                                                                                                                                                                                                                                     
  ||||||  |||||||||||||      ||||          ||||| |||||  ||                                                                                                                                                                                                                                                                                                     A
  ATATGT  GTCACCGCCTCGA      ACTG          GATTT TTTTA  AC                                                                                                                                                                                                                                                                                                     
        AC             AAACGT    TCCTTACAAA     -     GA  AATATACCATCTTCCTAACTAAACACTTCACTTTACTTAAAAAATACCAACAATGAACAATACCCGGTTATAAAAACGCGAATAGAAGTTGACACGACCCTTTATAACTGTTCACAGTTCATTAGAGTATTTAATTGTACTTACTTTTCTTAAATCCAAAGGTATCCATACACCAGTGCAGCACCTAAATATAAACCAAGTGTAGATAACCATAACCAAGGTTAATTATATTATAGATGTACCTTTACCACTTCGTCCATAGATCACGTGTGATAAAAAAATCCACCAATTTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1930166

CATGTATACAGTGGCGGAGCTTGACCGAAAAATGTGGGGGGAGCCATGCTTATAAACCATAAGTACTAAAACCAGTTAGCAAGACATACACCGAACTCATTACACCACAAAGTTTTCTTGTTTCTTGATAGTTACAGTTAAAAAAACCCAAAAGAACTCTAAATGTTCAAACTACCCTTTGGATTACAACATCAAGAAATGAAAAAAAATATATAACTTCTTTTGATATCATCCTTTGTTGAGAGATTAGAACAAATATAGCAATACATAATATCAAAATAGAAAGTTCATATTAAATTAAAGAACACCCACAACCAGATGTATCGCTAAAAAATTTAACCACCTAAAAAAATAGTGTGCACTAGATACCTGCTTCACCATTTCCATGTAGATATTATATTAATTGGAACCAATACCAATAGATGTGAACCAAATATAAATCCACGACGTGACCACATACCTATGGAAACCTAAATTCTTTTCATTCATGTTAATTTATGAGATTACTTGACACTTGTCAATATTTCCCAGCACAGTTGAAGATAAGCGCAAAAATATTGGCCCATAACAAGTAACAACCATAAAAAATTCATTTCACTTCACAAATCAATCCTTCTACCATATAACAAGATTTTTTTAGAAACATTCCTGTCATGCAAAAGCTCCGCCACTGCATGTATA

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