SE1930168

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4211
  • Lotus japonicus
  • SE1930168
  • hAT
  • Hat11
  • LjT22N13:64537-64913
  • CTTTCAAG
  • CTTTCAAGCAGTGACGGATCCA

Secondary structure and sequence

TSD    TIR
5'



3' 
   TC      T          -----------       TAT TAGTGAAGACAATATATACATATAAATTCGTAATAAAAAAATTAACATATTTTATTAGGAGTGAAGACATTTTTTACCAAAGAAGACACAAGTGAAGTCATTTTTTACCAAATGCGTCATAAAAAACCACATATTTTACTACTCAAGTGAG
CTT  AAGCAG GACGGATCCA           GAAATTT   G                                                                                                                                                       
|||  |||||| ||||||||||           |||||||   |                                                                                                                                                       G
GAA  TTCGTC CTGCCTAGGT           TACTCCC   G                                                                                                                                                       
   CT      C          TCAACACCTCA       --- TTCACGGGAGTGAATTTATACTTTTTTATGTAATCTTTTTTTAAACTCATCATTTTCATACACCAAAAAATACTAAGGAAACTATTTTTAACGGGAGTGAATATAAGGTGTAATGATTTACGAGAGTGAACACAAGGTGTAACGATTTACG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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