SE1930177

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4220
  • Lotus japonicus
  • SE1930177
  • hAT
  • Hat11
  • CM0124:6740-7119
  • GGCATATA
  • CAGTGACGGATTTAAGTAGGACACCATGAGGGCATGTGC

Secondary structure and sequence

TSD    TIR
5'



3' 
GGCATATA              --   AG  CAC A        ---     ---------C    CTTAAATTTGAGAATAATCATTAGAAAAAAAATTGAGTAGTAAAAGTATGTGGTTTTTTATGACTATTTTGGTAAAAAAATGTCTTCACTTGCGTTCTACATTGCTAAATGCCCTCGCTTGTATTTGACAT
        CAGTGACGGATTTA  AGT  GA   C TGAGGGCA   TGTGC          CTCA                                                                                                                                   
        ||||||||||||||  |||  ||   | ||||||||   |||||          ||||                                                                                                                                    
        GTCACTGCCTAGGT  TTA  CT   G ACTCCCGT   ATATG          CATA                                                                                                                                   
ATATACGG              CT   AA  ACA C        TAT     TATATTTAAA    TTTTTTTAAATTAATATGATAATCTTCACTCACGTAGAAAATGGTTTTTTACTTCTGTTCACTCCTGTAAAAATTGATTTCTTCAGTATTTTTTGGTGTATGAAAATGGTGAGTTCACTCCCGTAAATCGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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