SE1930178

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4221
  • Lotus japonicus
  • SE1930178
  • hAT
  • Hat37
  • LjSGA_085921:581-827
  • TAGACAAC
  • CAGTGGCGGACCTACTTGAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TAGACAAC          CCT       GACAG T      CATGGCTCCCTCAGAATTACTATATATATTTAAATTACAAGAGAATAGACAAGTTTGAATGTTGTCCCAGTGGTCAGATTTAGC
        CAGTGGCGGA   ACTTGAT     G GGGAGC                                                                                    
        ||||||||||   |||||||     | ||||||                                                                                    T
        GTCACCGCCT   TGAACTG     A GAAACC                                                                                    
CAACAGAT          ---       GATTT -      TCCTCGGTTTTTTTTATGATTTATATCTTATAGTGTGGTTTCACAACCTCCGACCTAAACTTGTGTCTTGGTTTACCTACTCTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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