SE1930183

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4226
  • Lotus japonicus
  • SE1930183
  • hAT
  • Hat16
  • LjSGA_103171:94-844
  • CTACTAAG
  • AGTAGGGATGGCA

Secondary structure and sequence

TSD    TIR
5'



3' 
CTACTA             -CCC   C  ----------       C -   AGTGGCCCCCCCATCCCCGTCCCCGCATCTCTCTTTTGTCCCCGTCCCCATCCCCATTCCCCACGGCGGGGTAAATTTTCACCCGGGGTAAATTTTCACCCCATCCCCAATCCCCACCTCCCCACGGGTCCCCATGGGGACCATTAACGCATCATTAAAAATATAATAAAACTAAATTAAATATAAAAAATACACAAATTTCTTCCTGGACCACAAATGTATAGAAACCACGGATGAGAATAGAACATGTCAAATTCCATGAAAATGTATATTGAAGTTCAAATAACATTGATCAAAATTCATAACATTAAGTCTACAAATAAGAAAATT
      AGTAGGGATGGCA    GCG GG          GACGGGG G GGG                                                                                                                                                                                                                                                                                                                                          
      |||||||||||||    ||| ||          ||||||| | |||                                                                                                                                                                                                                                                                                                                                          G
      TCATCCCTACCGT    GGT GG          TCTAGGG G ACC                                                                                                                                                                                                                                                                                                                                          
GAATCA             TAAA   -  TACATATACC       - C   CCTGACAGGGCAAACCCCGGGACTAGGACCCCTTAAAAAGGGACACCCCCACCCCTACCCCTGTTTTTAGGGGGGCTTTGTTTAAACCCCTACCCCTACCCCTAGTGGGAGGGGCGGGGCATATATATACATTTTTTAATTATTATGGAAATCATTAGTTTCAGTTCATCCATTATTTTTTATATTTCATAGTATCGGTTAATATATCTCAAGTTTTTTTTTATAAAACCTAACTTACAACTTTATTATGGAAAAAAGCCGCAACTGAAAACTCTATAAAACCTACTATCTGAAGTGTAAAAAAACCTAACTTATAACTTAAAATATACA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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