SE1930187

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4230
  • Lotus japonicus
  • SE1930187
  • hAT
  • Hat20
  • CM0122:1176059-1176211
  • CCTGAGAG
  • CTGAGAGCAGGGTTGTTAATGGCCGATAGCGTAGCCTAGCGCC

Secondary structure and sequence

TSD    TIR
5'



3' 
 C  G  A     G           -  --      ------    C       AAGCCCAAAAAA       ----AT   GA
  CT AG GCAGG TTGTTAATGGC CG  ATAGCG      TAGC TAGCGCC            CGCTATT      TTC  
  || || ||||| ||||||||||| ||  ||||||      |||| |||||||            |||||||      |||   
  GA TC CGTCC AACAATTATCG GC  TATCGC      ATTG ATCGCGG            GCGATGA      AAG  
GA  G  -     G           C  GA      CGTGTT    T       GACCCCCAAGTG       GGTGAT   TG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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