SE1920191

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4234
  • Lotus japonicus
  • SE1920191
  • Mutator
  • M38
  • CM0660:14095-14505
  • TATTAAATG
  • TATTAAATGGGCTTAATTACAAATTTGGTCCCTATACTTTCAAAAATTTGTAATTTTGGTCCCTATAGTTTCATTCGCTCAAACTAAGTCCCTCTATCTTCAAAATCGAATAAATTTGATCCTGATGTTAACTTGTCCTC

Secondary structure and sequence

TSD    TIR
5'



3'
    A                 A                        T              C          TTC       C     CCC     C        CGA     TT  --------A  CT              C  -----------      ---  A    -- AACATATGCCATGTATTACAGTTTTTGATATGGAAAATGA
TATT AATGGGCTTAATTACAA TTTGGTCCCTATACTTTCAAAAAT TGTAATTTTGGTCC TATAGTTTCA   GCTCAAA TAAGT   TCTAT TTCAAAAT   ATAAA  TG         TC  GATGTTAACTTGTC TC           CAAAAA   CT ACAG  G                                        
|||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||   ||||||| |||||   ||||| ||||||||   |||||  ||         ||  |||||||||||||| ||           ||||||   || ||||  |                                        T
ATAA TTATCCGAATTAATGTT AAACCAGGGATATGAAAGTTTTTA GCATTAAAACCAGG ATATCAAAGT   CGAGTTT ATTCA   AGATG AAGTTTTA   TGTTT  AC         AG  TTGTAATTGAACAG AG           CTTTTT   AC TATA  T                                        
    A                 A                        C              T          TAA       A     AAT     A        ATA     TT  CAAGTTACA  -T              T  CTTATTCATCG      TCA  -    CC AGTATTAGAAAATGCACTTACTGTACAATTCTACTAAATA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End