SE1920195

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4238
  • Lotus japonicus
  • SE1920195
  • Mutator
  • M6
  • CM1625:78381-78588
  • TTTATTTTA
  • AGGGTTAATGGTCAAATTAGTCCCTAAATTTATAAACGACTTTGATTTTAGTCCCTTGAGAAAAATGACGTTTAGTGACGGTCA

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTATTTT                      C  AAA       AC  C                -                     A      TTTTTAC    ATT
        AGGGTTAATGGTCAAATTAGTC CT   TTTATAA  GA TTTGATTTTAGTCCCT TGAGAAAAATGACGTTTAGTG CGGTCA       AACT   
        |||||||||||||||||||||| ||   |||||||  || |||||||||||||||| ||||||||||||||||||||| ||||||       ||||    
        TCCCAATTACTAGTTTAATCAG GA   AAATATT  CT AAACTAAAATCAGGGA ATTCTTTTTACTGTAAATCAC GCCAGT       TTGG   
ATTTTATT                      A  CAC       CA  C                G                     C      -----TT    CAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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