Plant MITE

SE1920201

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4244
Lotus japonicus
SE1920201
Mutator
M11
CM0021:1046167-1046362
CCTAGAGAG
CTAGAGAGGGATTTGGATCTCTCCAGCT

Secondary structure and sequence

TSD TIR

5'

3'

 C  AG  A      T     -         GCTGGA      AAC     ATATCACACTTAAAAAAATTTAGTATTTAAATTACTTTTTTCAACTTAACAC
  CT  AG GGGATT GGATC TCTCCAGCT      GAGTCC   AGTGT                                                    
  ||  || |||||| ||||| |||||||||      ||||||   |||||                                                     
  GA  TC CCCTAA CCTAG AGAGGTCGG      TTTAGG   AGAGG                                                    
GA  GA  -      C     G         ----GT      ---     TCGGAAATGCCGAGTAAATATCGGTATCTAGTTTTATTAATTACTAACTCTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1920201

CCTAGAGAGGGATTTGGATCTCTCCAGCTGCTGGAGAGTCCAACAGTGTATATCACACTTAAAAAAATTTAGTATTTAAATTACTTTTTTCAACTTAACACATCTCAATCATTAATTATTTTGATCTATGGCTATAAATGAGCCGTAAAGGCTGGAGAGGATTTTGGGCTGGAGAGGATCCCAATCCCCTAGAGAG

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